Selected first author/co-first author publications


Altorki NK, Walsh ZH, Melms JC, Port JL, Lee BE, Nasar A, Spinelli C, Caprio L, Rogava M, Ho P, Christos PJ, Saxena A, Elemento O, Bhinder B, Ager C, Amin AD, Sanfilippo NJ, Mittal V, Borczuk AC, Formenti SC, Izar B, McGraw TE. (2023). Neoadjuvant durvalumab plus radiation versus durvalumab alone in stages I-III non-small cell lung cancer: survival outcomes and molecular correlates of a randomized phase II trial. Nat Commun. 14(1):8435.  

Bashkirova EV, Klimpert N, Monahan K, Campbell CE, Osinski J, Tan L, Schieren I, Pourmorady A, Stecky B, Barnea G, Xie XS, Abdus-Saboor I, Shykind BM, Marlin BJ, Gronostajski RM, Fleischmann A, Lomvardas S.(2023). Opposing, spatially-determined epigenetic forces impose restrictions on stochastic olfactory receptor choice.  Elife. 12:RP87445.

Garretti F, Monahan C, Sloan N, Bergen J, Shahriar S, Kim SW, Sette A, Cutforth T, Kanter E, Agalliu D, Sulzer D. (2023).  Interaction of an α-synuclein epitope with HLA-DRB115:01 triggers enteric features in mice reminiscent of prodromal Parkinson's disease. Neuron. 111(21):3397-3413.

Garretti F, Monahan C, Sette A, Agalliu D, Sulzer D. (2022). T cells, α-synuclein and Parkinson disease. Handb Clin Neurol. 184:439-455.

Griffin AT, Vlahos LJ, Chiuzan C, Califano A. (2023). NaRnEA: An Information Theoretic Framework for Gene Set Analysis. Entropy (Basel). 25(3):542.

Ho P, Melms JC, Rogava M, Frangieh CJ, Poźniak J, Shah SB, Walsh Z, Kyrysyuk O, Amin AD, Caprio L, Fullerton BT, Soni RK, Ager CR, Biermann J, Wang Y, Khosravi-Maharlooei M, Zanetti G, Mu M, Fatima H, Moore EK, Vasan N, Bakhoum SF, Reiner SL, Bernatchez C, Sykes M, Mace EM, Wucherpfennig KW, Schadendorf D, Bechter O, Shah P, Schwartz GK, Marine JC, Izar B. (2023). The CD58-CD2 axis is co-regulated with PD-L1 via CMTM6 and shapes anti-tumor immunity. Cancer Cell. 41(7):1207-1221.e12.

Huang Y,Sheth RU, Zhao S, Cohen LA, Dabaghi K, Moody T, Sun Y, Ricaurte D, Richardson MVelez-Cortes F, Blazejewski T, Kaufman A, Ronda C, Wang HH. (2023) High-throughput microbial culturomics using automation and machine learning. Nat Biotechnol. 41(10):1424-1433.

Kasbekar M, Mitchell CA, Proven MA, Pssegué E. (2023). Hematopoietic stem cells through the ages: A lifetime of adaptation to organismal demands. Cell Stem Cell. 30(11):1403-1420.

Kesner JS, Chen Z, Shi P, Aparicio AO, Murphy MR, Guo Y, Trehan A, Lipponen JE, Recinos Y, Myeku N, Wu X. (2023). Noncoding translation mitigation. Nature. 617(7960):395 402.

Kim S, Armand J, Safonov A, Zhang M, Soni RK, Schwartz G, McGuinness JE, Hibshoosh H, Razavi P, Kim M, Chandarlapaty S, Yang HW. (2023). Sequential activation of E2F via Rb degradation and c-Myc drives resistance to CDK4/6 inhibitors in breast cancer. Cell Rep. 42(11):113198.

Koss H, Crawley T, Palmer AG 3rd. (2023). Site-based description of R relaxation in local reference frames. J Magn Reson. 347:107366.

Lampe GD, Sternberg SH. (2023). Novel recombinases for large DNA insertions. Nat Biotechnol. 41(4):471-472.

Lampe GD, King RT, Halpin-Healy TS, Klompe SE, Hogan MI, Vo PLH, Tang S, Chavez A, Sternberg SH(2023). Targeted DNA integration in human cells without double-strand breaks using CRISPR-associated transposases. Nat Biotechnol. 10.1038/s41587-023-01748-1.

Liu L, Casner RG, Guo Y, Wang Q, Iketani S, Chan JF, Yu J, Dadonaite B, Nair MS, Mohri H, Reddem ER, Yuan S, Poon VK, Chan CC, Yuen KY, Sheng Z, Huang Y, Bloom JD, Shapiro L, Ho DD. (2023). Antibodies targeting a quaternary site on SARS-CoV-2 spike glycoprotein prevent viral receptor engagement by conformational locking.  Immunity. 56(10):2442-2455.e8.

Mitchell CA, Verovskaya EV, Calero-Nieto FJ, Olson OC, Swann JW, Wang X, Hérault A, Dellorusso PV, Zhang SY, Svendsen AF, Pietras EM, Bakker ST, Ho TT, Göttgens B, Passegué E.  (2023). Nat Cell Biol. 25(1):30-41.

Savage TM, Vincent RL, Rae SS, Huang LH, Ahn A, Pu K, Li F, de Los Santos-Alexis K, Coker C, Danino T, Arpaia N. (2023). Chemokines expressed by engineered bacteria recruit and orchestrate antitumor immunity.Sci Adv. 9(10):eadc9436.

Rybkina K, Bell JN, Bradley MC, Wohlbold T, Scafuro M, Meng W, Korenberg RC, Davis-Porada J, Anderson BR, Weller RJ, Milner JD, Moscona A, Porotto M, Luning Prak ET, Pethe K, Connors TJ, Farber DL. (2023). SARS-CoV-2 infection and recovery in children: Distinct T cell responses in MIS-C compared to COVID-19.  J Exp Med. 220(8):e20221518.

Ressler AK, Goldstein DB.  (2023). Using reported pathogenic variants to identify therapeutic opportunities for genetic diseases. Mol Genet Genomic Med. 11(1):e2097.

Tomlinson KL, Riquelme SA, Baskota SU, Drikic M, Monk IR, Stinear TP, Lewis IA, Prince AS.  (2023). Staphylococcus aureus stimulates neutrophil itaconate production that suppresses the oxidative burst. Cell Rep. 42(2):112064.

Tomlinson KL, Chen YT, Junker A, Urso A, Wong Fok Lung T, Ahn D, Hofstaedter CE, Baskota SU, Ernst RK, Prince A, Riquelme SA. (2023). Ketogenesis promotes tolerance to Pseudomonas aeruginosa pulmonary infection. Cell Metab. 35(10):1767-1781.

von Krusenstiern AN, Robson RN, Qian N, Qiu B, Hu F, Reznik E, Smith N, Zandkarimi F, Estes VM, Dupont M, Hirschhorn T, Shchepinov MS, Min W, Woerpel KA, Stockwell BR.(2023). Identification of essential sites of lipid peroxidation in ferroptosis. Nat Chem Biol. 19(6):719-730.

Wang BZ,Nash TR, Zhang X, Rao J, Abriola L, Kim Y, Zakharov S, Kim M, Luo LJ, Morsink M, Liu B, Lock RI, Fleischer S, Tamargo MA, Bohnen M, Welch CL, Chung WK, Marx SO, Surovtseva YV, Vunjak-Novakovic G, Fine BM. (2023). Engineered cardiac tissue model of restrictive cardiomyopathy for drug discovery. Cell Rep Med. 4(3):100976.

Zagelbaum J, Schooley A, Zhao J, Schrank BR, Callen E, Zha S, Gottesman ME, Nussenzweig A, Rabadan R, Dekker J, Gautier J. (2023). Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nat Struct Mol Biol. 30(1):99-106.


Cho JD, Yang M, Santa-Maria I. (2022). Modeling Alzheimer's disease: considerations for a better translational and replicable mouse model. Neural Regen Res. 17(11):2448-2449.

Chen CW, Potenski AM, Colón Ortiz CK, Avrutsky MI, Troy CM. (2022). In vivo Vascular Injury Readouts in Mouse Retina to Promote Reproducibility. Vis Exp. (182):10.3791/63782.

Cohen AO, Woo SH, Zhang J, Cho J, Ruiz ME, Gong J, Du R, Yarygina O, Jafri DZ, Bachelor MA, Finlayson MO, Soni RK, Hayden MS, Owens DM. (2022). Tbc1d10c is a selective, constitutive suppressor of the CD8 T-cell anti-tumor response. Oncoimmunology. 11(1):2141011.

Colón Ortiz C, Neal AM, Avrutsky MI, Choi M, Smart J, Lawson J, Troy CM. (2022). Neurovascular injury associated non-apoptotic endothelial caspase-9 and astroglial caspase-9 mediate inflammation and contrast sensitivity decline. Cell Death Dis. 13(11):937.

Colón Ortiz CK, Potenski AM, Johnson KV, Chen CW, Snipas SJ, Jean YY, Avrutsky MI, Troy CM. (2022). Quantification of Immunostained Caspase-9 in Retinal Tissue. Vis Exp (185):10.3791/64237.

Flynn, E., and Lappalainen, T. (2022). Functional Characterization of Genetic Variant Effects on Expression. Annu Rev Biomed Data Sci.

Flynn, E.D., Tsu, A.L., Kasela, S., Kim-Hellmuth, S., Aguet, F., Ardlie, K.G., Bussemaker, H.J., Mohammadi, P., and Lappalainen, T. (2022). Transcription factor regulation of eQTL activity across individuals and tissues. PLoS Genet. 18, e1009719.

Giangreco, N.P., Elias, J.E., and Tatonetti, N.P. (2022). No population left behind: Improving paediatric drug safety using informatics and systems biology. Br J Clin Pharmacol. 88, 1464-1470.

Giangreco, N.P.,and Tatonetti, N.P. (2022). A database of pediatric drug effects to evaluate ontogenic mechanisms from child growth and development. Med (N Y). 3(8):579-595.e7

Hobson, B.D., Choi, S.J., Mosharov, E.V., Soni, R.K., Sulzer, D., and Sims, P.A. (2022). Subcellular proteomics of dopamine neurons in the mouse brain. Elife 11.

Hobson, B.D., Kong, L., Angelo, M.F., Lieberman, O.J., Mosharov, E.V., Herzog, E., Sulzer, D., and Sims, P.A. (2022). Subcellular and regional localization of mRNA translation in midbrain dopamine neurons. Cell Reports. 38, 110208.

Hoffmann FT, Kim M, Beh LY, Wang J, Vo PLH, Gelsinger DR, George JT, Acree C, Mohabir JT, Fernández IS, Sternberg SH. (2022). Selective TnsC recruitment enhances the fidelity of RNA-guided transposition. Nature. 609(7926):384-393.

Huang, Y., Sheth, R.U., Kaufman, A., and Wang, H.H. (2020). Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics. Nucleic Acids Research. 48, e20.

Kanai M, Yeo T, Asua V, Rosenthal PJ, Fidock DA, Mok S. (2022). Comparative Analysis of Plasmodium falciparum Genotyping via SNP Detection, Microsatellite Profiling, and Whole-Genome Sequencing. Antimicrob Agents Chemother. 66(1):e0116321.

Klompe, S.E., Jaber, N., Beh, L.Y., Mohabir, J.T., Bernheim, A., and Sternberg, S.H. (2022). Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons. Mol Cell. 82, 616-628 e615.

Li T, Akinade T, Zhou J, Wang H, Tong Q, He S, Rinebold E, Valencia Salazar LE, Bhansali D, Zhong Y, Ruan J, Du J, Dalerba P, Leong KW.  (2022). Therapeutic Nanocarriers Inhibit Chemotherapy-Induced Breast Cancer Metastasis. Adv Sci (Weinh). 9(33):e2203949.

Metz JB, Hornstein NJ, Sharma SD, Worley J, Gonzalez C, Sims PA(2022). High-throughput translational profiling with riboPLATE-seq.  Sci Rep. 12(1):5718.

Rapp MShapiro L, Frank J. (2022). Contributions of single-particle cryoelectron microscopy toward fighting COVID-19. Trends Biochem Sci. 47(2):117-123.

Rybkina K, Davis-Porada J, Farber DL. (2022). Tissue immunity to SARS-CoV-2: Role in protection and immunopathology. Immunol Rev. 309(1):25-39.

Sheng J,Hod EA, Vlad G, Chavez A. (2022). Quantifying protein abundance on single cells using split-pool sequencing on DNA-barcoded antibodies for diagnostic applications. Sci Rep. 12(1):884.

Velez-Cortes F, Wang H. Characterization and Spatial Mapping of the Human Gut Metasecretome. (2022). mSystems. 7(6):e0071722.

Wang, B.Z.,Luo, L.J., and Vunjak-Novakovic, G. (2022). RNA and Protein Delivery by Cell-Secreted and Bioengineered Extracellular Vesicles. Adv Healthc Mater. 11, e2101557.

Wang, P., Casner, R.G., Nair, M.S., Yu, J., Guo, Y., Wang, M., Chan, J.F., Cerutti, G., Iketani, S., Liu, L., et al. (2022). A monoclonal antibody that neutralizes SARS-CoV-2 variants, SARS-CoV, and other sarbecoviruses. Emerg Microbes Infect. 11, 147-157.


Boyle, L., Rao, L., Kaur, S., Fan, X., Mebane, C., Hamm, L., Thornton, A., Ahrendsen, J.T., Anderson, M.P., Christodoulou, J., Gennerich, A., Shen, Y., Chung, W.K. (2021). Genotype and defects in microtubule-based motility correlate with clinical severity in KIF1A-associated neurological disorder. HGG Adv. 2(2):100026. 

Broyde, J., Simpson, D.R., Murray, D., Paull, E.O., Chu, B. W., Tagore, S., Jones, S.J., Griffin, A.T., Giorgi, F.M., Lachmann, A., Jackson, P., Sweet-Cordero, E.A., Honig, B. and Calfiano, A. (2021). Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses. Nature Biotech. 39:215-224.

Cai SS, Li T, Akinade T, Zhu Y, Leong KW. (2021). Drug delivery carriers with therapeutic functions. Adv Drug Deliv Rev. 76:113884.

Cerutti G, Rapp M, Guo Y, Bahna F, Bimela J, Reddem ER, Yu J, Wang P, Liu L, Huang Y, Ho DD, Kwong PD, Sheng Z, Shapiro L.  (2021). Structural basis for accommodation of emerging B.1.351 and B.1.1.7 variants by two potent SARS-CoV-2 neutralizing antibodies. Structure. 29(7):655-663.e4.

Cho JD, Kim YA, Rafikian EE, Yang M, Santa-Maria I. (2021). Marked Mild Cognitive Deficits in Humanized Mouse Model of Alzheimer's-Type Tau Pathology. Front Behav Neurosci. 15:634157.

Coleman, I., and Korem, T. (2021). Embracing Metagenomic Complexity with a Genome-Free Approach. mSystems. 6, e0081621.

Collins, A., Mitchell, C.A., and Passegue, E. (2021). Inflammatory signaling regulates hematopoietic stem and progenitor cell development and homeostasis. The Journal of Experimental Medicine. 218.

Crawley, T. and Palmer III, A.G. (2021). Approximate Representations of Shaped Pulses Using the Homotopy Analysis Method. Magnetic Resonance2(1):175-186.

Crawley, T. and Palmer III, A.G. (2021). Bootstrap Aggregation for Model Selection in the Model-free Formalism. Magnetic Resonance. 2(1):251-264.

Dhindsa, R.S., Zoghbi, A.W., Krizay, D.K., Vasavda, C., & Goldstein, D.B. (2021). A Transcriptome-Based Drug Discovery Paradigm for Neurodevelopmental Disorders. Annals of Neurology. 89(2), 199-211.

Giangreco, N.P., Lebreton, G., Restaino, S., Jane Farr, M., Zorn, E., Colombo, P.C., Patel, J., Levine, R., Truby, L., Soni, R.K., et al. (2021). Plasma kallikrein predicts primary graft dysfunction after heart transplant. The Journal of Heart and Lung Transplantation: the official publication of the International Society for Heart Transplantation. 40, 1199-1211.

Giangreco, N.P., Lina, S., Qian, J., Kuoame, A., Subbian, V., Boerwinkle, E., Cicek, M., Clark, C.R., Cohen, E., Gebo, K.A., et al. (2021). Pediatric data from the All of Us research program: demonstration of pediatric obesity over time. JAMIA Open. 4, ooab112.

Giangreco, N.P., and Tatonetti, N.P. (2021). Evaluating risk detection methods to uncover ontogenic-mediated adverse drug effect mechanisms in children. BioData Min. 14:34.

Gomez K, Rabadan R. (2021). A persistent look at how tumours evade therapy. Nature. 596(7873):491-493.

Hegewisch-Solloa, E., Seo, S., Mundy-Bosse, B.L., Mishra, A., Waldman, E.H., Maurrasse, S., Grunstein, E., Connors, T.J., Freud, A.G., and Mace, E.M. (2021). Differential Integrin Adhesome Expression Defines Human NK Cell Residency and Developmental Stage. Journal of Immunology. 207, 950-965.

Ho, T.T.*, Dellorusso, P.V.*, Verovskaya E.V.*, Bakker S.T., Flach J., Smith L.K., Ventura P.B., Lansinger O.M., Herault A., Zhang S.Y., Kang Y.A., Mitchell C.A., Villeda S.A., Passegue E. (2021). Aged hematopoietic stem cells are refractory to bloodborne systemic rejuvenation interventions. J Exp Med. 218(7).

Liang, X.*, Qiu, X.*, Dionne, G.*, Cunningham, C.L., Pucak, M.L., Peng, G., Kim, Y.H., Lauer, A., Shapiro, L., and Muller, U. (2021). CIB2 and CIB3 are auxiliary subunits of the mechanotransduction channel of hair cells. Neuron109(13):2131-2149.e15

Liu, B., Wang, B., Zhang, X., Lock, R., Nash, T., & Vunjak-Novakovic, G. (2021). Cell type-specific microRNA therapies for myocardial infarction. Science Translational Medicine. 13(580), eabd0914.

Moon C.S., Reglero C., Cortes J.R., Quinn S.A., Alvarez S., Zhao J., Lin W.W., Cooke A.J., Abate F., Soderquist C.R., Fiñana C., Inghirami G., Campo E., Bhagat G., Rabadan R., Palomero T., Ferrando A.A. (2021). FYN-TRAF3IP2 induces NF-κB signaling-driven peripheral T cell lymphoma. Nat Cancer. 2(1):98-113.

Murithi, J.M., Pascal, C., Bath, J., Boulenc, X., Gnadig, N.F., Pasaje, C.F.A., Rubiano, K., Yeo, T., Mok, S., Klieber, S., et al., (2021). The antimalarial MMV688533 provides potential for single-dose cures with a high barrier to Plasmodium falciparum parasite resistance. Science Translational Medicine. 13.

Obradovic, A., Chowdhury, N., Haake, S.M., Ager, C., Wang, V., Vlahos, L., Guo, X.V., Aggen, D.H., Rathmell, W.K., Jonasch, E., et al. (2021). Single-cell protein activity analysis identifies recurrence-associated renal tumor macrophages. Cell. 184, 2988-3005 e2916.

Paik, D.H. and Farber, D.L. (2021). Anti-viral protective capacity of tissue resident memory T cells. Current Opinion in Virology. 46, 20–26.

Paik, D.H. and Farber, D.L. (2021). Influenza infection fortifies local lymph nodes to promote lung-resident heterosubtypic immunity. The Journal of Experimental Medicine. 218(1), e20200218.

Park, J., and Wang, H.H. (2021). Systematic dissection of sigma(70) sequence diversity and function in bacteria. Cell Reports. 36, 109590.

Park, J., Yim, S.S., and Wang, H.H. (2021). High-Throughput Transcriptional Characterization of Regulatory Sequences from Bacterial Biosynthetic Gene Clusters. ACS Synth Biol. 10, 1859-1873.

Paull, E.O.*, Aytes, A.*, Jones, S.J.*, Subramaniam, P.S., Giorgi, F.M., Douglass, E.F., Tagore, S., Chu, B., Vasciaveo, A., Zheng, S., Verhaak, R., Abate-Shen, C., Alvarez, M.J., & Califano, A. (2021). A modular master regulator landscape controls cancer transcriptional identity. Cell. 184(2), 334-351.e20. 

Poon, M.M.L.Rybkina, K., Kato, Y., Kubota, M., Matsumoto, R., Bloom, N.I., Zhang, Z., Hastie, K.M., Grifoni, A., Weiskopf, D., et al. (2021). SARS-CoV-2 infection generates tissue-localized immunological memory in humans. Sci Immunol 6, eabl9105.

Rapp, M., Guo Y., Reddem E.R., Yu J., Liu L., Wang P., Cerutti G., Katsamba P., Bimela J.S., Bahna F.A., Mannepalli S.M., Zhang B., Kwong P.D., Huang Y., Ho D.D., Shapiro L., Sheng Z. (2021). Modular basis for potent SARS-CoV-2 neutralization by a prevalent VH1-2-derived antibody class. Cell Rep. 2021;35(1):108950

Resnick, S.J., Iketani, S., Hong, S.J., Zask, A., Liu, H., Kim, S., Melore, S., Lin, F.Y., Nair, M.S., Huang, Y., et al. (2021). Inhibitors of Coronavirus 3CL Proteases Protect Cells from Protease-Mediated Cytotoxicity. J Virol. 95, e0237420.

Tamargo, M.A.Nash, T.R., Fleischer, S., Kim, Y., Vila, O.F., Yeager, K., Summers, M., Zhao, Y., Lock, R., Chavez, M., et al. (2021). milliPillar: A Platform for the Generation and Real-Time Assessment of Human Engineered Cardiac Tissues. ACS Biomater Sci Eng. 7, 5215-5229.

Tate, T.Xiang, T., Wobker, S.E., Zhou, M., Chen, X., Kim, H., Batourina, E., Lin, C.S., Kim, W.Y., Lu, C., et al. (2021). Pparg signaling controls bladder cancer subtype and immune exclusion. Nature Communications. 12, 6160.

Thomas, D.G., Wei, Y., & Tall, A.R. (2021). Lipid and metabolic syndrome traits in coronary artery disease: a Mendelian randomization study. Journal of Lipid Research. 62:100044

Tomlinson, K.L., Lung, T., Dach, F., Annavajhala, M.K., Gabryszewski, S.J., Groves, R.A., Drikic, M., Francoeur, N.J., Sridhar, S.H., Smith, M.L., Khanal, S., Britto, C.J., Sebra, R., Lewis, I., Uhlemann, A.C., Kahl, B.C., Prince, A.S., & Riquelme, S.A. (2021). Staphylococcus aureus induces an itaconate-dominated immunometabolic response that drives biofilm formation. Nature Communications. 12(1), 1399.

Tomlinson, K.L., Prince, A.S., and Wong Fok Lung, T. (2021). Immunometabolites Drive Bacterial Adaptation to the Airway. Front Immunol. 12, 790574.

Usmanova, D.R., Plata, G., and Vitkup, D. (2021). The Relationship between the Misfolding Avoidance Hypothesis and Protein Evolutionary Rates in the Light of Empirical Evidence. Genome Biol Evol. 13.

Wang, P., Casner, R.G., Nair, M.S., Wang, M., Yu, J., Cerutti, G., Liu, L., Kwong, P.D., Huang, Y., Shapiro, L., et al. (2021). Increased resistance of SARS-CoV-2 variant P.1 to antibody neutralization. Cell Host Microbe. 29, 747-751 e744.


Abrams, J., Roybal, D., Chakouri, N., Katchman, A.N., Weinberg, R., Yang, L., Chen, B.X., Zakharov, S.I., Hennessey, J.A., Avula, U., Diaz, J., Wang, C., Wan, E.Y., Pitt, G.S., Ben-Johny, M., & Marx, S.O. 2020. Fibroblast growth factor homologous factors tune arrhythmogenic late NaV1.5 current in calmodulin binding-deficient channels. JCI Insight. 5(19), e141736.

Avrutsky, M.I., Colon Ortiz, C., Johnson, K.V., Potenski, A.M. Chen, C.W., Lawson, J.M., White, A.J., Yuen, S.K., Morales, F.M., Canepa, E., Snipas, S.J., Salvesen, G.S., Jean, Y.J., and Troy, C.M., 2020. Endothelial activation of caspase-9 promotes neurovascular injury in retinal vein occlusion. Nature Communications. 11(1):3173

Blattman, S.B., Jiang, W., Oikonomou, P., and Tavazoie, S., 2020. Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing. Nature Microbiology. 5, 1192-1201

Brandt, M., Gokden, A., Ziosi, M., and Lappalainen, T.A., 2020. Polyclonal allelic expression assay for detecting regulatory effects of transcript variants. Genome Med. 12(1):79.

Chramiec, A., Teles, D., Yeager, K., Marturano-Kruik, A., Pak, J., Chen, T., Hao, L., Wang, M., Lock, R., Tavakol, D.N., Lee, M.B., Kim, J., Ronaldson-Bouchard, K., and Vunjak-Novakovic, G., 2020. Integrated human organ-on-a-chip model for predictive studies of anti-tumor drug efficacy and cardiac safety. Lab on a Chip. 20(23), 4357–4372. 

Costabile, B.K., Kim, Y.K., Chen, Y., Clarke, O.B., Quadro, L., Mancia, F., 2020. Sample preparation for structural and functional analyses of the STRA6 receptor for retinol-binding protein. Methods Enzymol. 637:95-117.

Fan, J., Du, W., Kim-Muller, J. Y., Son, J., Kuo, T., Larrea, D., Garcia, C., Kitamoto, T., Kraakman, M.J., Owusu-Ansah, E., Cirulli, V., & Accili, D. 2020. Cyb5r3 links FoxO1-dependent mitochondrial dysfunction with β-cell failure. Molecular Metabolism. 34, 97–111.

Georgieva, D., Liu, Q., Wang, K., and Egli, D. 2020. Detection of base analogs incorporated during DNA replication by nanopore sequencing. Nucleic Acids
. 48, e88.

Giangreco, N.P., Elias, J.E., and Tatonetti, N.P. 2020. No population left behind: Improving paediatric drug safety using informatics and systems biology. Br J Clin Pharmacol. Dec 17. doi: 10.1111/bcp.14705. Online ahead of print.

Goodman, J.H. and Ferrante, A.W., Jr 2020. Fighting for Fat: Gluttonous Tumors and Starved T Cells. Cell. 183(7), 1739–1741.

Halpin-Healy, T.S., Klompe, S.E., Sternberg, S.H., and Fernández, I.S. 2020. Structural basis of DNA targeting by a transposon-encoded CRISPR–Cas system. Nature. 577(7789), 271-274.

Hill, V.M., O'Connor, R.M., & Shirasu-Hiza, M. 2020. Tired and stressed: Examining the need for sleep. The European Journal of Neuroscience. 51(1), 494–508.

Hobson, B.D., Kong, L., Hartwick, E.W., Gonzalez, R.L., & Sims, P.A. 2020. Elongation inhibitors do not prevent the release of puromycylated nascent polypeptide chains from ribosomes. eLife. 9, e60048.

Huang, Y., Sheth, R.U., Kaufman, A., and Wang, H.H. 2020. Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics. Nucleic Acids Research 48, e20.

Ji, B.W.*, Sheth, R.U.*, Dixit, P.D., Tchourine, K., & Vitkup, D. 2020. Macroecological dynamics of gut microbiota. Nature Microbiology. 5(5), 768–775.

Huang, Y., Sheth, R.U., Kaufman, A., and Wang, H.H., 2020. Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics. Nucleic Acids Res. 48(4):e20.

Liu, C.*, Tate, T.*, Batourina E., Truschel S.T., Potter S., Adam M., Xiang, T., Picard, M., Reiley, M., Schneider, K., Tamargo, M., Lu, C., Chen, X., He, J., Kim, H., Mendelsohn, C.L. 2020. Pparg promotes differentiation and regulates mitochondrial gene expression in bladder epithelial cells. Nat Commun.

Liu, Z., Yuan, J., Lasorella, A., Iavarone, A., Bruce, J.N., Canoll, P., and Sims, P.A. 2020. Integrating single-cell RNA-seq and imaging with SCOPE-seq2. Scientific Reports. 10, 19482.

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